J2-M172 Research Tree simplified (0.90.1 beta ©2015-07-02 CC-BY-SA ChrisR @ J2-M172 Haplogroup research)

Tree Versions (see also below):

Phylogeny and Haplogroup SNPs (two most prominents / good coverage) based on J2-M172_spreadsheet (synonymous SNP-names not always listed). Usually listed SNPs are checked for genome-seq-uniqueness with BLAT 1kbp and YFull SNP search (see Spreadsheet>Phylo-SNPs for details)
Listing of SNP count in terminal samples: FGC (Full Genomes Corp), BigY (FTDNA), Mag13 (1000 Genomes Project, Magoon et al 2013), EB15 (Estonian Biocentre CG, Karmin et al 2015), PGP (Personal Genome Project), PF15 & PF13 (Sardinian Francalacci et al 2015 & 2013), PH14 (Hallast et al 2014), SK14 (SK/Stoneking, Lippold et al 2014), GoNL (Y-VCF 2012), Chromo2 (2014), YFS (YFull Single Best+Acceptable).
Recurrent SNPs are considered to define clades when no alternative is available and they are found in more then two samples. Recurrency is shown like SNP.1/3 (3 times recurrent). Historically informative (recurrent) SNPs included.
Legend: [under research] {tentative split} (Single/Private) ? placement vs parallel branches unavailable * upstream placement uncertified

Priority for Haplogroups: Backbone Skeleton Body Informative
Expected Informative
Low Diversity
approx. 700-1400 years

Tooltip/Hover shows (proposed) hierarchical names, notes, ecquivalent SNPs, etc.
Further info: J2-M172 Haplogroup Research, Files, Google Drive. If you have problems (Request Timed Out) try to use another browser or to login/logout to your Google Account.
More Output examples (use querylanguage for customized output):
Haplogroup presets J2a-M410 (no Research), L26 (no Research), L24 (no Research), Z438, PF5401, Z7700, PF5197 (no Research), Z7430, PF5172, PF5125 (no Research), M67 (no Research), Z458, S25258, M92, Y6240, Z7671, S23154 incl. M319, Z6065, Z6064, Z6049, PF5050 incl. L581, J2b-M12 (no Research), L283, Z2432. etc. (try for yourself).
SNP presets (alpha) L24, PF5197.
Tables J2-M172 Basic, J2-M172, J2-M410, J2a-L26, J2a-L24, J2a-PF5197, J2a-PF5116, J2a-M67, J2a-PF5008 (L581?), J2b-M12,M102.
Filters (in development): phylotree.org structure (including splits), Panel A: J2 deep known clades (all except M67 & L24), Panel B: deep known clades M67 & L24.

This tree output © 2015-06-26 CC-BY-SA ChrisR@J2-M172 Haplogroup research. Google Docs J2-M172_spreadsheet data maintained by © 2015-07 CC-BY-SA ChrisR+Team@J2-M172 Haplogroup research & partnering Admins (M67, L24, M319), updates show up here.