J2-M172 Research Tree simplified (1.18a beta ©2024-07-17 CC-BY-SA ChrisR @ J2-M172 Haplogroup research, doi:10.6084/m9.figshare.1431389)

Tree Versions (see also below):

Phylogeny and Haplogroup SNPs (most prominents/good-coverage + historically informative) based on J2-M172_spreadsheet (synonymous SNP-names not always listed). Usually listed SNPs are checked for genome-seq-uniqueness with BLAT using ybrowse FastaDumper (since late 2017 hg38 / use Chrome/ium: ISOGG 500bp, SangerSeq 1kbp; ) and YFull SNP search (see Spreadsheet>Phylo-SNPs for details including hg19/b37 coordinates, hgLiftOver).
Recurrent SNPs are considered to define clades when no alternative is available and they are found in more then two samples. Recurrency is shown: SNP. (found once in a sample outside of Hg J), SNP.1 or SNP.2 or SNP.x (not more then twice in Hg's), SNP.1/3 (3 times recurrent). +xx shows the amount of equivalent SNP including those under research (unclear position).
Legend: [under research] less then 5 samples, {tentative split} based on less then 3 samples and/or ~ low-confidence SNPs and/or ? unclear ancestral state, (Single/Private), ? placement vs parallel branches unavailable not tested for paralell branch/es, * upstream placement uncertified no-coverage in paralell branch/es;

Priority for Haplogroups: Backbone Skeleton Body Informative
Expected Informative
Low Diversity
approx. 700-1400 years
Terminal samples / Listing of SNP count: FGC (Full Genomes Corp, List), BigY FTDNA (List), Genographic Proj. (List), Single SNP etc. (List), Mag13 (1000 Genomes Project, Magoon et al 2013, List), PGP (Personal Genome Project, List), GoNL (Y-VCF 2012, List), Chromo2 (2014), SK14 (SK/Stoneking, Lippold et al 2014, List), PH14 (Hallast et al 2014, List), EB15 (Estonian Biocentre CG, Karmin et al 2015, List), PF15 & PF13 (Sardinian Francalacci et al 2015 & 2013, List), YFS (YFull Single Best+Acceptable, List).

Tooltip/Hover shows (proposed) hierarchical names, notes, ecquivalent SNPs, etc. Zoom by using CTRL + SCROLL-UP/DOWN or +/- or 0 to reset to 100%
Further info: J2-M172 Haplogroup Research, Files, Google Drive. If you receive weird tree output the database is probably currently updated or filtered for maintenance. If you have problems (Request Timed Out) try to use another browser or to login/logout to your Google Account.
More Output examples (use querylanguage for customized output):
Haplogroup presets J2a-M410 (no Research), L26 (no Research), PF5125,PF5116 (no Research), Z6065 & M47, M67 (no Research), M92, Y6240,PF7394, Z447 & L210, S25258, Z28551,Z6268, Z7671, S23154 & M319, L24 (no Research), Z438 & L70, PF5294,PF4888, Z7700,F3133, FGC33111,PF2254, PF5197 (no Research), PF5172, Z7430, Z6064 & M68, Z6049, PF5050 & L581, J2b-M102 (no Research), M205, L283, Z2444, etc. (try for yourself).
SNP presets (beta, might not be updated): Z6065, M67, S23154, L24, PF5197, Z6064, Z6049, PF5050, M205, M241.
Tables J2-M172 Basic, J2-M172, J2-M410, J2a-L26, J2a-PF5116, J2a-M67, J2a-L24, J2a-PF5197, J2a-PF5008 (L581?), J2b-M12,M102.
Filters (in development, uncovered splits in between included): phylotree.org 2014, YSEQ J2 Panels V1 2015-04 - V2 2015-11, FTDNA SNP Packs J2-M172, J2a-M67,L24.

This tree output © 2020-08-10 CC-BY-SA ChrisR@J2-M172 Haplogroup research. Google Docs J2-M172_spreadsheet data maintained by © 2024-07 CC-BY-SA ChrisR+Team@J2-M172 Haplogroup research & partnering Admins (M67, L24 Aburto et al, M319, M241), updates show up here; ISOGG J2 as consolidated reference; YFull YTree J2 as cross-reference.; PhyloTree Y as minimal reference.